nf-core/admixture @ 0.0.0-0c7146d
ADMIXTURE is a program for estimating ancestry in a model-based manner from large autosomal SNP genotype datasets, where the individuals are unrelated (for example, the individuals in a case-control association study).
| Tool | Description | Homepage |
|---|---|---|
| admixture | ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. | https://dalexander.github.io/admixture/ |
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed_ped_geno
file
|
One of PLINK ".bed" file or PLINK ".ped" or EIGENSTRAT ".geno" file. If you provide ".bed" then you need to provide ".bim" and "fam" files. If you provide ".ped" or ".geno" then you need to provide a ".map" file and an empty channel.
*.{bed}
|
bim_map
file
|
Mandatory accompanying file. One of PLINK ".bim" file or PLINK ".map" file. Provide ".bim" if ".bed" is the input. Provide ".map" if ".ped" or ".geno" is the input.
*.{bim}
|
fam
file
|
PLINK ".fam" file. Mandatory if you provide ".bed" as input. Replace with an empty channel if input is ".ped" or ".geno".
*.{fam}
|
K
integer
|
Belief of the number of ancestral populations.
{*}
|
|---|
Output
3 channels
#1
allele_frequencies
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.P
file
|
Space-delimited files containing the allele frequencies of the inferred ancestral populations. The output filenames have the number of populations (K) that was assumed for the analysis.
*.{P}
|
#2
ancestry_fractions
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.Q
file
|
Space-delimited files containing ancestry fractions. The output filenames have the number of populations (K) that was assumed for the analysis.
*.{Q}
|
#3
versions_admixture
tuple
${task.process}
string
|
The name of the process |
|---|---|
admixture
string
|
The name of the tool |
admixture --version | tail -n 1
eval
|
The expression to obtain the version of the tool |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 18:41:26 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fadmixture/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/admixture/blobs/sha256:91e12021811122b1f2867f050ca91d2a8dd71dce89faa9632160cda1cce20cf7 |
| Size | 2.9 KB |
| Checksum | sha256:91e12021811122b1f2867f050ca91d2a8dd71dce89faa9632160cda1cce20cf7 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:41:26 (UTC) | PUBLISHED | 2 | 2.9 KB |