nf-core/affy/justrma @ 0.0.0-0c7146d
Read CEL files into an ExpressionSet and generate a matrix
| Tool | Description | Homepage |
|---|---|---|
| affy | Methods for Affymetrix Oligonucleotide Arrays | https://www.bioconductor.org/packages/release/bioc/html/affy.html |
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
samplesheet
file
|
CSV or TSV format sample sheet with sample metadata and CEL file names |
celfiles_dir
list
|
Path to a directory containing CEL files
*.{CEL,CEL.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
description
file
|
Optional description file in MIAME format |
Output
4 channels
#1
rds
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.rds
file
|
Serialised ExpressionSet object
*.rds
|
#2
annotation
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.annotation.tsv
file
|
TSV-format annotation table
*.annotation.tsv
|
#3
expression
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*matrix.tsv
file
|
TSV-format intensity matrix
matrix.tsv
|
#4
versions_affy
versions.yml
file
|
File containing software versions
versions.yml
|
|---|
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 18:41:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Faffy%2Fjustrma/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/affy/justrma/blobs/sha256:2e1ebeeed30194334c3698167c4b26e35c58ea57434ebd0cd217dbb40b571e55 |
| Size | 5.9 KB |
| Checksum | sha256:2e1ebeeed30194334c3698167c4b26e35c58ea57434ebd0cd217dbb40b571e55 |
| Downloads | 5 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:41:28 (UTC) | PUBLISHED | 5 | 5.9 KB |