nf-core/agat/convertspgxf2gxf @ 0.0.0-0c7146d
Fixes and standardizes GFF/GTF files and outputs a cleaned GFF/GTF file
| Tool | Description | Homepage |
|---|---|---|
| agat | AGAT is a toolkit for manipulation and getting information from GFF/GTF files | https://github.com/NBISweden/AGAT |
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gxf
file
|
Annotation file in GFF3/GTF format
*.{gff, gtf}
|
Output
2 channels
#1
output_gff
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*.agat.gff
file
|
Cleaned annotation file in GFF3 format
*.{gff}
|
#2
versions_agat
tuple
${task.process}
string
|
The name of the process |
|---|---|
agat
string
|
The name of the tool |
agat --version | sed 's/v//'
eval
|
The expression to obtain the version of the tool |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 18:41:38 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fagat%2Fconvertspgxf2gxf/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/agat/convertspgxf2gxf/blobs/sha256:eea959406c340bad24766456607fc16a3e3032bf86bf4745abe1bcbc51f2dc16 |
| Size | 2.1 KB |
| Checksum | sha256:eea959406c340bad24766456607fc16a3e3032bf86bf4745abe1bcbc51f2dc16 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:41:38 (UTC) | PUBLISHED | 4 | 2.1 KB |