nf-core/agrvate @ 0.0.0-0c7146d
Summary
Rapid identification of Staphylococcus aureus agr locus type and agr operon variants
Get started
Add the following snippet to your workflow script to include this module.
include { AGRVATE } from 'nf-core/agrvate'
License
MIT License
Process
Name
|
AGRVATE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
A Staphylococcus aureus fasta file. *.fasta
|
Output
3 channels
#1
summary
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${fasta.baseName}-results/${fasta.baseName}-summary.tab
file
|
A summary of the agrvate assessment *-summary.tab
|
#2
results_dir
${fasta.baseName}-results
directory
|
Results of the agrvate assessment *-results
|
|---|
#3
versions_agrvate
tuple
${task.process}
string
|
The name of the process |
|---|---|
agrvate
string
|
The name of the tool |
agrvate --version | sed 's/[^0-9.]//g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| agrvate | Rapid identification of Staphylococcus aureus agr locus type and agr operon variants. | https://github.com/VishnuRaghuram94/AgrVATE |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:41:56 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fagrvate/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/agrvate/blobs/sha256:117ae1ede965cc4dc782940b8e8e4d9f617270a144aa525bd737fdc1b4974d7d |
| Size | 2.4 KB |
| Checksum | sha256:117ae1ede965cc4dc782940b8e8e4d9f617270a144aa525bd737fdc1b4974d7d |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:01:55 (UTC) | 4 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:01:26 (UTC) | 4 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:41:56 (UTC) | 4 | 2.4 KB |