nf-core/angsd/gl @ 0.0.0-6c4ed3a
Summary
Calculated genotype likelihoods from BAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { ANGSD_GL } from 'nf-core/angsd/gl'
License
MIT License
Process
Name
|
ANGSD_GL |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
A list of BAM or CRAM files *.{bam,cram}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
A reference genome in FASTA format *.fasta
|
#3
tuple
meta3
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
error_file
file
|
A file containing information about type specific errors. *.error.chunkunordered
|
Output
2 channels
#1
versions_angsd
tuple
${task.process}
string
|
The name of the process |
|---|---|
angsd
string
|
The name of the tool |
angsd 2>&1 | sed '1!d;s/.*version: //;s/ .*//'
eval
|
The expression to obtain the version of the tool |
#2
genotype_likelihood
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.{glf,beagle}.gz
file
|
File containing genotype likelihoods per sample *.{glf,beagle}.gz
|
| Tool | Description | Homepage |
|---|---|---|
| angsd | ANGSD: Analysis of next generation Sequencing Data | http://www.popgen.dk/angsd/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:02:22 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fangsd%2Fgl/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/angsd/gl/blobs/sha256:e9be248b63118ef6ee4ca6fcafbdbf2abad3c04626c8e488e9a1dd83354d2609 |
| Size | 3.5 KB |
| Checksum | sha256:e9be248b63118ef6ee4ca6fcafbdbf2abad3c04626c8e488e9a1dd83354d2609 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:22 (UTC) | 3 | 3.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:01:45 (UTC) | 3 | 3.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:42:38 (UTC) | 3 | 3.5 KB |