Nextflow Modules
Showing module(s) with keyword "angsd"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/angsd/contamination | Process | angsd population genetics nuclear contamination estimate | A tool to estimate nuclear contamination in males based on heterozygosity in the female chromosome. |
| nf-core/angsd/docounts | Process | angsd population genetics allele counts doCounts | Calculates base frequency statistics across reference positions from BAM. |
| nf-core/angsd/dosaf | Process | angsd genotype likelihood genomics | Estimate site allele frequencies from BAM files. |
| nf-core/angsd/gl | Process | angsd genotype likelihood genomics | Calculated genotype likelihoods from BAM files. |
| nf-core/angsd/realsfs | Process | angsd genotype likelihood genomics site frequency spectrum | Estimate site frequency spectrum from site allele frequencies |
| nf-core/angsd/soapsnpcalibration | Process | angsd genotype likelihood soapsnp calibration genomics | Generate ANGSD SOAPsnp genotype likelihood calibration files (counts/quality matrices) from BAM alignments. |
| nf-core/bam_docounts_contamination_angsd | Workflow | angsd bam contamination docounts | Calculate contamination of the X-chromosome with ANGSD |