nf-core/any2fasta @ 0.0.0-6c4ed3a
Summary
Convert various sequence formats (GenBank, GFF, FASTQ, FASTA, CLUSTAL, Stockholm, GFA) to FASTA format. Input files may be gzip, bzip2, zip, or zstd compressed.
Get started
Add the following snippet to your workflow script to include this module.
include { ANY2FASTA } from 'nf-core/any2fasta'
License
MIT License
Process
Name
|
ANY2FASTA |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
sequence
file
|
Input sequence file in any supported format (GenBank, GFF, FASTQ, FASTA, CLUSTAL, Stockholm, GFA). May be gzip, bzip2, zip, or zstd compressed. GFF3 must include a FASTA inside. *.{gb,gbk,fa,fasta,fna,fq,fastq,gff,gfa,clw,sth,gb.gz,gbk.gz,fa.gz,fasta.gz,fq.gz,fastq.gz}
|
Output
2 channels
#1
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.fasta
file
|
Output sequences in FASTA format *.fasta
|
#2
versions_any2fasta
tuple
${task.process}
string
|
The name of the process |
|---|---|
any2fasta
string
|
The name of the tool |
any2fasta -v 2>&1 | head -1 | sed 's/any2fasta //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| any2fasta | Convert various sequence formats to FASTA | https://github.com/tseemann/any2fasta |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:02:33 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fany2fasta/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/any2fasta/blobs/sha256:23410ed1f16087ec9a47fd75747b11764265b0f86dce464ea6cb4a4e34f2eacc |
| Size | 2.5 KB |
| Checksum | sha256:23410ed1f16087ec9a47fd75747b11764265b0f86dce464ea6cb4a4e34f2eacc |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:33 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:01:54 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:42:59 (UTC) | 3 | 2.4 KB |