Nextflow Modules
Showing module(s) with keyword "sequences"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/any2fasta | Process | fasta conversion sequences format genomics | Convert various sequence formats (GenBank, GFF, FASTQ, FASTA, CLUSTAL, Stockholm, GFA) to FASTA format. Input files may be gzip, bzip2, zip, or zstd compressed. |
| nf-core/barrnap | Process | rrna sequences removal | barrnap uses a hmmer profile to find rrnas in reads or contig fasta files |
| nf-core/emboss/revseq | Process | nucleotides reverse complement sequences | the revseq program from emboss reverse complements a nucleotide sequence |
| nf-core/epang/place | Process | phylogeny phylogenetic placement sequences | phylogenetic placement of query sequences in a reference tree |
| nf-core/epang/split | Process | phylogeny phylogenetic placement sequences | splits an alignment into reference and query parts |
| nf-core/kmcp/compute | Process | metagenomics classify taxonomic profiling fastq sequences kmers | Generate k-mers (sketches) from FASTA/Q sequences |
| nf-core/kmcp/index | Process | metagenomics classify taxonomic profiling fastq sequences kmers index | Construct KMCP database from k-mer files |
| nf-core/kmcp/merge | Process | metagenomics classify taxonomic profiling fastq sequences kmers | Merge search results from multiple databases. |
| nf-core/kmcp/profile | Process | metagenomics classify taxonomic profiling fastq sequences kmers index | Generate taxonomic profile from search results |
| nf-core/kmcp/search | Process | metagenomics classify taxonomic profiling fastq sequences kmers | Search sequences against database |
| nf-core/mash/sketch | Process | mash mash/sketch minhash reduced representations sequences sketch | Creates vastly reduced representations of sequences using MinHash |
| nf-core/mmseqs_fasta_cluster | Workflow | fasta sequences cluster linclust mmseqs | Subworkflow that generates a clustering TSV file from a set of amino acid sequence within a FASTA file. |