nf-core/arriba/download @ 0.0.0-6c4ed3a
Summary
Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data.
Get started
Add the following snippet to your workflow script to include this module.
include { ARRIBA_DOWNLOAD } from 'nf-core/arriba/download'
License
MIT License
Process
Name
|
ARRIBA_DOWNLOAD |
|---|
Input
1 channel
genome
string
|
hg38, hg19, GRCh38, GRCh37 for humans are accepted |
|---|
Output
5 channels
#1
blacklist
blacklist*${genome}*.tsv.gz
string
|
The blacklist removes recurrent alignment artifacts and transcripts which are present in healthy tissue .tsv.gz
|
|---|
#2
cytobands
cytobands*${genome}*.tsv
file
|
Coordinates of the Giemsa staining bands. This information is used to draw ideograms .tsv
|
|---|
#3
known_fusions
known_fusions*${genome}*.tsv.gz
file
|
Arriba is more sensitive to those fusions to improve the detection rate of expected or highly relevant events, such as recurrent fusions *.tsv.gz
|
|---|
#4
protein_domains
protein_domains*${genome}*.gff3
file
|
Protein domain annotations *.gff3
|
|---|
#5
versions_arriba
tuple
${task.process}
string
|
The name of the process |
|---|---|
arriba
string
|
The name of the tool |
arriba -h | grep "Version:" 2>&1 | sed "s/Version:\s//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| arriba | Fast and accurate gene fusion detection from RNA-Seq data | https://github.com/suhrig/arriba |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:02:43 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Farriba%2Fdownload/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/arriba/download/blobs/sha256:b5eb74e1090e70441c893d72b7e8ad3607e4b45ebccfa2199bdb44f869e01726 |
| Size | 2.6 KB |
| Checksum | sha256:b5eb74e1090e70441c893d72b7e8ad3607e4b45ebccfa2199bdb44f869e01726 |
| Downloads | 5 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:43 (UTC) | 5 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:14 (UTC) | 3 | 2.6 KB |