Nextflow Modules
Showing module(s) with keyword "fusion"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/arriba/arriba | Process | fusion arriba detection RNA-Seq | Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data. |
| nf-core/arriba/download | Process | fusion arriba reference | Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data. |
| nf-core/arriba/visualisation | Process | visualisation arriba fusion RNA-Seq | Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data. |
| nf-core/fusioncatcher/fusioncatcher | Process | fusion rna fastq | FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data |
| nf-core/fusioninspector | Process | fusioninspector fusion RNA-seq fastq | Validation of Fusion Transcript Predictions |
| nf-core/parabricks/starfusion | Process | fusion starfusion rna | This tool uses the GPU to perform fusion calling for RNA-Seq samples, utilizing the STAR-Fusion algorithm. This requires input of a genome resource library, in accordance with the original STAR-Fusion tool, and outputs candidate fusion transcripts. |