nf-core/artic/guppyplex @ 0.0.0-6c4ed3a
Summary
Aggregates fastq files with demultiplexed reads
Get started
Add the following snippet to your workflow script to include this module.
include { ARTIC_GUPPYPLEX } from 'nf-core/artic/guppyplex'
License
MIT License
Process
Name
|
ARTIC_GUPPYPLEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fastq_dir
directory
|
Directory containing the fastq files with demultiplexed reads *
|
Output
2 channels
#1
fastq
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fastq.gz
file
|
Aggregated FastQ files *.{fastq.gz}
|
#2
versions_artic
tuple
${task.process}
string
|
The name of the process |
|---|---|
artic
string
|
The name of the tool |
artic -v 2>&1 | sed "s/^.*artic //; s/ .*$//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| artic | ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore | https://artic.readthedocs.io/en/latest/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:02:49 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fartic%2Fguppyplex/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/artic/guppyplex/blobs/sha256:cbd9bcd93f0f68a2455bcbc741ef3f072a2eeb4c8e6f07a7097928e714340cd8 |
| Size | 2.4 KB |
| Checksum | sha256:cbd9bcd93f0f68a2455bcbc741ef3f072a2eeb4c8e6f07a7097928e714340cd8 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:49 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:22 (UTC) | 3 | 2.4 KB |