nf-core/bamstats/generalstats @ 0.0.0-6c4ed3a
Summary
write your description here
Get started
Add the following snippet to your workflow script to include this module.
include { BAMSTATS_GENERALSTATS } from 'nf-core/bamstats/generalstats'
License
MIT License
Process
Name
|
BAMSTATS_GENERALSTATS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
Sorted BAM/CRAM/SAM file *.{bam,cram,sam}
|
Output
2 channels
#1
json
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.json
file
|
json containing bam statistics *.json
|
#2
versions_bamstats
tuple
${task.process}
string
|
The name of the process |
|---|---|
bamstats
string
|
The name of the tool |
bamstats --version | grep "version: " | sed -e s"/version: //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bamstats | A command line tool to compute mapping statistics from a BAM file | https://github.com/guigolab/bamstats/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:03:23 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbamstats%2Fgeneralstats/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bamstats/generalstats/blobs/sha256:e8b41137b842dfd59d267572040d99dc0e1e8dfedb53d7f4978cb4c7bc4c7df8 |
| Size | 2.2 KB |
| Checksum | sha256:e8b41137b842dfd59d267572040d99dc0e1e8dfedb53d7f4978cb4c7bc4c7df8 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:03:23 (UTC) | 2 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:02:39 (UTC) | 3 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:44:16 (UTC) | 3 | 2.2 KB |