Nextflow Modules
Showing module(s) with keyword "statistics"
| Module | Keywords | Description |
|---|---|---|
| nf-core/agat/spstatistics | genome gff gtf statistics | Provides different type of statistics in text format from a GFF/GTF annotation file |
| nf-core/agat/sqstatbasic | genome gff gtf statistics | Provides basic statistics in text format from a GFF/GTF annotation file |
| nf-core/assemblyscan | assembly statistics summary json | Assembly summary statistics in JSON format |
| nf-core/bamstats/generalstats | bam statistics genomics | write your description here |
| nf-core/bedtools/jaccard | vcf gff bed jaccard intersection union statistics | Calculate Jaccard statistic b/w two feature files. |
| nf-core/endorspy | endogenous DNA ancient DNA percent on target statistics | endorS.py calculates endogenous DNA from samtools flagstat files and print to screen |
| nf-core/fastqscan | fastq summary statistics | FASTQ summary statistics in JSON format |
| nf-core/gfatools/stat | summary statistics gfa rgfa graph genomics | Summary statistics for GFA files |
| nf-core/gt/stat | genome gff3 annotation statistics stats | GenomeTools gt-stat utility to show statistics about features contained in GFF3 files |
| nf-core/mtnucratio | mtnucratio ratio reads bam mitochondrial to nuclear ratio mitochondria statistics | A small Java tool to calculate ratios between MT and nuclear sequencing reads in a given BAM file. |
| nf-core/nonpareil/curve | metagenomics statistics coverage complexity redundancy diversity visualisation | Visualise metagenome redundancy curve in PNG format from a single Nonpareil npo file |
| nf-core/nonpareil/nonpareil | metagenomics statistics coverage redundancy diversity complexity | Calculate metagenome redundancy curve from FASTQ files |
| nf-core/nonpareil/nonpareilcurvesr | metagenomics statistics coverage redundancy diversity complexity multiqc | Generate summary reports with raw data for Nonpareil NPO curves, including MultiQC compatible JSON/TSV files |
| nf-core/nonpareil/set | metagenomics statistics coverage complexity redundancy diversity visualisation | Visualise metagenome redundancy curves in PNG format from multiple Nonpareil npo files in a single image |
| nf-core/panacus/histgrowth | statistics pangenome graph gfa genomics | Calculates a coverage histogram from a GFA file and constructs a growth table from this as either a TSV or HTML file |
| nf-core/panacus/visualize | statistics pangenome graph visualization tsv genomics | Create visualizations from a tsv coverage histogram created with panacus. |
| nf-core/picard/collectalignmentsummarymetrics | metrics alignment statistics bam | Collect metrics about the alignment summary of a paired-end library. |
| nf-core/picard/collecthsmetrics | alignment metrics statistics insert |