Nextflow Modules
Showing module(s) with keyword "statistics"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/agat/spstatistics | Process | genome gff gtf statistics | Provides different type of statistics in text format from a GFF/GTF annotation file |
| nf-core/agat/sqstatbasic | Process | genome gff gtf statistics | Provides basic statistics in text format from a GFF/GTF annotation file |
| nf-core/assemblyscan | Process | assembly statistics summary json | Assembly summary statistics in JSON format |
| nf-core/bam_qc_picard | Workflow | statistics counts hs_metrics wgs_metrics bam sam cram | Produces comprehensive statistics from BAM file |
| nf-core/bamstats/generalstats | Process | bam statistics genomics | write your description here |
| nf-core/bam_stats_samtools | Workflow | statistics counts bam sam cram | Produces comprehensive statistics from SAM/BAM/CRAM file |
| nf-core/bedtools/jaccard | Process | vcf gff bed jaccard intersection union statistics | Calculate Jaccard statistic b/w two feature files. |
| nf-core/eautils/fastqstats | Process | fastq statistics quality control genomics | Calculate general and per-base statistics from FASTQ files |
| nf-core/endorspy | Process | endogenous DNA ancient DNA percent on target statistics | endorS.py calculates endogenous DNA from samtools flagstat files and print to screen |
| nf-core/faa_seqfu_seqkit | Workflow | fasta protein preprocessing statistics quality check | Subworkflow that optionally preprocesses amino acid FASTA sequences (seqkit seq/replace/rmdup), computes sequence statistics before and after preprocessing using seqfu stats, and exports MultiQC-compatible statistics and software versions. |
| nf-core/fastq_contam_seqtk_kraken | Workflow | statistics fastq contamination | Produces a contamination report from FastQ input after subsampling |
| nf-core/fastqscan | Process | fastq summary statistics | FASTQ summary statistics in JSON format |
| nf-core/gfatools/stat | Process | summary statistics gfa rgfa graph genomics | Summary statistics for GFA files |
| nf-core/gt/stat | Process | genome gff3 annotation statistics stats | GenomeTools gt-stat utility to show statistics about features contained in GFF3 files |
| nf-core/hmmer/hmmstat | Process | hidden markov model HMM hmmer statistics profile summary | display summary statistics for each profile HMM in an HMM database file |
| nf-core/mtnucratio | Process | mtnucratio ratio reads bam mitochondrial to nuclear ratio mitochondria statistics | A small Java tool to calculate ratios between MT and nuclear sequencing reads in a given BAM file. |
| nf-core/nonpareil/curve | Process | metagenomics statistics coverage complexity redundancy diversity visualisation | Visualise metagenome redundancy curve in PNG format from a single Nonpareil npo file |
| nf-core/nonpareil/nonpareil |