nf-core/bamtools/stats @ 0.0.0-6c4ed3a
Summary
BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { BAMTOOLS_STATS } from 'nf-core/bamtools/stats'
License
MIT License
Process
Name
|
BAMTOOLS_STATS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM file *.bam
|
Output
2 channels
#1
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.stats
file
|
File containing alignment statistics *.stats
|
#2
versions_bamtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
bamtools
string
|
The name of the tool |
bamtools --version | sed '2!d;s/bamtools //g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bamtools | C++ API & command-line toolkit for working with BAM data | http://github.com/pezmaster31/bamtools |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:04:26 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbamtools%2Fstats/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bamtools/stats/blobs/sha256:7c6368e653c8b2d9bd8efd873d37fb288bca96b7864c2f84fc36292bc2c8f267 |
| Size | 2.2 KB |
| Checksum | sha256:7c6368e653c8b2d9bd8efd873d37fb288bca96b7864c2f84fc36292bc2c8f267 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:04:26 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:03:18 (UTC) | 3 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:45:06 (UTC) | 4 | 2.1 KB |