Nextflow Modules
Showing module(s) with keyword "stats"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bamtools/stats | bamtools stats bam | BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files. |
| nf-core/bcftools/plotvcfstats | visualization stats VCF | Plots the output of bcftools stats |
| nf-core/bcftools/stats | variant calling stats VCF | Generates stats from VCF files |
| nf-core/gt/stat | genome gff3 annotation statistics stats | GenomeTools gt-stat utility to show statistics about features contained in GFF3 files |
| nf-core/ltrretriever/lai | genomics annotation repeat long terminal retrotransposon retrotransposon stats qc | Estimates the mean LTR sequence identity in the genome. The input genome fasta should have short alphanumeric IDs without comments |
| nf-core/pairtools/stats | stats pairs pairsam | Calculate pairs statistics |
| nf-core/sambamba/flagstat | stats flagstat sambamba | Outputs some statistics drawn from read flags. |
| nf-core/samtools/flagstat | stats mapping counts bam sam cram | Counts the number of alignments in a BAM/CRAM/SAM file for each FLAG type |
| nf-core/samtools/idxstats | stats mapping counts chromosome bam sam cram | Reports alignment summary statistics for a BAM/CRAM/SAM file |
| nf-core/seqfu/stats | seqfu stats n50 | Statistics for FASTA or FASTQ files |
| nf-core/seqkit/stats | seqkit fasta stats | simple statistics of FASTA/Q files |
| nf-core/whatshap/stats | vcf whatshap stats phasing phase | Compute statistics from phased variant file using Whatshap |