nf-core/bbmap/index @ 0.0.0-6c4ed3a
Summary
Creates an index from a fasta file, ready to be used by bbmap.sh in mapping mode.
Get started
Add the following snippet to your workflow script to include this module.
include { BBMAP_INDEX } from 'nf-core/bbmap/index'
License
MIT License
Process
Name
|
BBMAP_INDEX |
|---|
Input
1 channel
fasta
file
|
fasta formatted file with nucleotide sequences *.{fna,fa,fasta}
|
|---|
Output
2 channels
#1
index
ref
directory
|
Directory containing the index files |
|---|
#2
versions_bbmap
tuple
${task.process}
string
|
The name of the process |
|---|---|
bbmap
string
|
The name of the tool |
bbversion.sh | grep -v "Duplicate cpuset"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bbmap | BBMap is a short read aligner, as well as various other bioinformatic tools. | https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:04:42 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbbmap%2Findex/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bbmap/index/blobs/sha256:ed257f9bebca7c501d63025c69c6978a5f17892e927086d94e35774206db0eca |
| Size | 2.3 KB |
| Checksum | sha256:ed257f9bebca7c501d63025c69c6978a5f17892e927086d94e35774206db0eca |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:04:42 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:45:32 (UTC) | 3 | 2.3 KB |