nf-core/bcftools/consensus @ 0.0.0-6c4ed3a
Summary
Compresses VCF files
Get started
Add the following snippet to your workflow script to include this module.
include { BCFTOOLS_CONSENSUS } from 'nf-core/bcftools/consensus'
License
MIT License
Process
Name
|
BCFTOOLS_CONSENSUS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
VCF file *.{vcf}
|
tbi
file
|
tabix index file *.{tbi}
|
fasta
file
|
FASTA reference file *.{fasta,fa}
|
mask
file
|
BED file used for masking *.{bed}
|
Output
2 channels
#1
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fa
file
|
FASTA reference consensus file *.{fasta,fa}
|
#2
versions_bcftools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bcftools
string
|
The tool name |
bcftools --version | sed '1!d; s/^.*bcftools //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| consensus | Create consensus sequence by applying VCF variants to a reference fasta file. | http://samtools.github.io/bcftools/bcftools.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:04:51 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Fconsensus/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bcftools/consensus/blobs/sha256:aad75767dc7e42e7ba3c3e3b67e36b4dc558ce5dc0d8057cf570bdda7a05dd78 |
| Size | 2.5 KB |
| Checksum | sha256:aad75767dc7e42e7ba3c3e3b67e36b4dc558ce5dc0d8057cf570bdda7a05dd78 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:04:51 (UTC) | 4 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:45:46 (UTC) | 4 | 2.5 KB |