Nextflow Registry | nf-core/bcftools/norm@0.0.0-6c4ed3a

nf-core/bcftools/norm @ 0.0.0-6c4ed3a

Normalize VCF file

normalize norm variant calling VCF

Latest version: 0.0.0-6c4ed3a

Total downloads: 7

Source: nf-core/modules

Authors: @abhi18av @ramprasadn

Maintainers: @abhi18av @ramprasadn

Normalize VCF file

Add the following snippet to your workflow script to include this module.

include { BCFTOOLS_NORM } from 'nf-core/bcftools/norm'

MIT License

Process

`Name`	`BCFTOOLS_NORM`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`vcf` file	The vcf file to be normalized e.g. 'file1.vcf' `*.{vcf,vcf.gz}`
`tbi` file	An optional index of the VCF file (for when the VCF is compressed) `*.vcf.gz.tbi`

#2 tuple

`meta2` map	Groovy Map containing reference information e.g. [ id:'genome' ]
`fasta` file	FASTA reference file `*.{fasta,fa}`

Output 4 channels

#1 csi tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.csi` file	Default VCF file index `*.csi`

#2 tbi tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tbi` file	Alternative VCF file index `*.tbi`

#3 vcf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.{vcf,vcf.gz,bcf,bcf.gz}` file	One of uncompressed VCF (.vcf), compressed VCF (.vcf.gz), compressed BCF (.bcf.gz) or uncompressed BCF (.bcf) normalized output file `*.{vcf,vcf.gz,bcf,bcf.gz}`

#4 versions_bcftools tuple

`${task.process}` string	The process the versions were collected from
`bcftools` string	The tool name
`bcftools --version \| sed '1!d; s/^.*bcftools //'` string	The command used to generate the version of the tool

Tool	Description	Homepage
norm	Normalize VCF files.	http://samtools.github.io/bcftools/bcftools.html

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:05:01 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Fnorm/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bcftools/norm/blobs/sha256:93f41f15d3fed0dd4a9382f3be3b85278c3c77c8b7a514a0b31b7538e75111b5
Size	4.4 KB
Checksum	sha256:93f41f15d3fed0dd4a9382f3be3b85278c3c77c8b7a514a0b31b7538e75111b5
Downloads	4

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:05:01 (UTC)		4	4.4 KB
0.0.0-0c7146d	08 Apr 2026 18:46:01 (UTC)		3	4.4 KB