Nextflow Modules
Showing module(s) with keyword "normalize"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bcftools/norm | normalize norm variant calling VCF | Normalize VCF file |
| nf-core/gatk4/leftalignandtrimvariants | gatk4 leftalignandtrimvariants norm normalize vcf | Left align and trim variants using GATK4 LeftAlignAndTrimVariants. |
| nf-core/octopusv/correct | structural variant sv svcf normalize | Standardize a caller VCF into OctopuSV SVCF format. |
| nf-neuro/image_math | absolute addition arithmetic blur ceil clip closing concatenate convert correlation difference dilation erosion floor image image-processing intersection invert log math mean multiplication normalize normalize-max normalize-sum opening operations round std subtraction threshold union | Perform various mathematical operations on one or several NIFTI images. The number of images required as input depends on the operation chosen. Some operations require only one image input, while some may require two or more. Several operations require a VALUE to be defined within the args. Note: This script is loading all images in memory, will often crash after a few hundred images. |