nf-core/bcftools/plugintag2tag @ 0.0.0-0c7146d
Summary
Converts between similar tags, such as GL,PL,GP or QR,QA,QS or localized alleles, eg LPL,LAD.
Get started
Add the following snippet to your workflow script to include this module.
include { BCFTOOLS_PLUGINTAG2TAG } from 'nf-core/bcftools/plugintag2tag'
License
MIT License
Name
|
BCFTOOLS_PLUGINTAG2TAG |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
The vcf file to be inspected. e.g. 'file.vcf' |
index
file
|
The tab index for the VCF file to be inspected. e.g. 'file.tbi' |
regions
file
|
Optionally, restrict the operation to regions listed in this file. e.g. 'file.vcf' |
|---|
targets
file
|
Optionally, restrict the operation to regions listed in this file (doesn't rely upon index files) e.g. 'file.vcf' |
|---|
csi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.csi
file
|
Default VCF file index *.csi
|
tbi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tbi
file
|
Alternative VCF file index *.tbi
|
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{vcf,vcf.gz,bcf,bcf.gz}
file
|
VCF normalized output file *.{vcf,vcf.gz,bcf,bcf.gz}
|
versions_bcftools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bcftools
string
|
The tool name |
bcftools --version | sed '1!d; s/^.*bcftools //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| view | Converts between similar tags, such as GL,PL,GP or QR,QA,QS or localized alleles, eg LPL,LAD. | http://samtools.github.io/bcftools/bcftools.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:46:16 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Fplugintag2tag/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bcftools/plugintag2tag/blobs/sha256:ac81b5738b775f9ef2328ff50ebbe5f05671f91acb9e20310ec190af523098f2 |
| Size | 3.8 KB |
| Checksum | sha256:ac81b5738b775f9ef2328ff50ebbe5f05671f91acb9e20310ec190af523098f2 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:05:12 (UTC) | 3 | 3.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:46:16 (UTC) | 3 | 3.8 KB |