Nextflow Registry | nf-core/bcftools/rohviz@0.0.0-6c4ed3a

nf-core/bcftools/rohviz @ 0.0.0-6c4ed3a

Visualise the output of bcftools roh

visualisation RoH VCF

Latest version: 0.0.0-6c4ed3a

Total downloads: 6

Source: nf-core/modules

Authors: @yz533cb

Visualise the output of bcftools roh

Add the following snippet to your workflow script to include this module.

include { BCFTOOLS_ROHVIZ } from 'nf-core/bcftools/rohviz'

MIT License

Process

`Name`	`BCFTOOLS_ROHVIZ`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`roh` file	Output of BCFtools_roh. Contains site-specific and/or per-region runs of homo/autozygosity calls. `*.roh`

#2 tuple

`meta1` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`vcf` file	VCF file `*.{vcf,.vcf.gz}`

`regions_list` file	Regions can be specified either on command line or in a VCF, BED, or tab-delimited file (the default).

`samples_file` file	File of sample names to include or exclude if prefixed with '^'.

Output 3 channels

#1 html tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`*.html` file	RoH visual report file. `*.html`

#2 versions_less tuple

`${task.process}` string	The process the versions were collected from
`less` string	The tool name
`less --version \| head -n1 \| sed 's/less //'` eval	The expression to obtain the version of the tool

#3 versions_bcftools tuple

`${task.process}` string	The process the versions were collected from
`bcftools` string	The tool name
`bcftools --version \| sed '1!d; s/^.*bcftools //'` eval	The command used to generate the version of the tool

Tool	Description	Homepage
roh-viz	"Visualise the output of bcftools roh. It creates an HTML/JavaScript document which can be interactively viewed in a web browser."	http://samtools.github.io/bcftools/bcftools.html

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:05:17 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Frohviz/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bcftools/rohviz/blobs/sha256:07772fddc1b110f425665cbdc40f28b657dbc2089c17cac8f16bd415fdb9ecc5
Size	2.9 KB
Checksum	sha256:07772fddc1b110f425665cbdc40f28b657dbc2089c17cac8f16bd415fdb9ecc5
Downloads	3

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:05:17 (UTC)		3	2.9 KB
0.0.0-0c7146d	08 Apr 2026 18:46:24 (UTC)		3	2.9 KB