Nextflow Modules
Showing module(s) with keyword "visualisation"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/amps | Process | malt MaltExtract HOPS amps alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome authentication damage edit distance post Post-processing visualisation | Post-processing script of the MaltExtract component of the HOPS package |
| nf-core/arriba/visualisation | Process | visualisation arriba fusion RNA-Seq | Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data. |
| nf-core/bandage/image | Process | gfa graph assembly visualisation | Render an assembly graph in GFA 1.0 format to PNG and SVG image formats |
| nf-core/bcftools/rohviz | Process | visualisation RoH VCF | Visualise the output of bcftools roh |
| nf-core/datavzrd | Process | visualisation tsv csv | Datavzrd is a tool to create visual HTML reports from collections of CSV/TSV tables. |
| nf-core/drep/compare | Process | drep genome fasta compare comparison visualisation metagenomics assembly microbial genomics dereplication | Performs rapid genome comparisons for a group of genomes and visualize their relatedness |
| nf-core/drep/dereplicate | Process | drep genome fasta compare comparison visualisation metagenomics assembly microbial genomics dereplication | Dereplicates a genome set by identifying highly similar genomes and choose the best representative genome |
| nf-core/gappa/examineheattree | Process | phylogeny phylogenetic placement heattree visualisation | colours a phylogeny with placement densities |
| nf-core/grimer | Process | metagenomics contamination visualisation taxonomy viromics microbiome dashboard | Generates an interactive HTML dashboard integrating taxonomy, annotation, and metadata to detect contamination in metagenomic and amplicon sequencing datasets. GRIMER is independent of quantification methods and directly analyses contingency tables. |
| nf-core/kaiju/kaiju2krona | Process | taxonomy visualisation krona chart metagenomics | Convert Kaiju's tab-separated output file into a tab-separated text file which can be imported into Krona. |
| nf-core/krona/ktimportkrona | Process | plot taxonomy interactive html visualisation krona chart | Collect multiple krona reports into a single html file |
| nf-core/krona/ktimporttaxonomy | Process | plot taxonomy interactive html visualisation krona chart | KronaTools Import Taxonomy imports taxonomy classifications and produces an interactive Krona plot. |
| nf-core/krona/ktimporttext | Process | plot taxonomy interactive html visualisation krona chart metagenomics | Creates a Krona chart from text files listing quantities and lineages. |
| nf-core/krona/ktupdatetaxonomy | Process | database taxonomy krona visualisation | KronaTools Update Taxonomy downloads a taxonomy database |
| nf-core/nonpareil/curve | Process | metagenomics statistics coverage complexity redundancy diversity visualisation | Visualise metagenome redundancy curve in PNG format from a single Nonpareil npo file |
| nf-core/nonpareil/set | Process | metagenomics statistics coverage complexity redundancy diversity visualisation | Visualise metagenome redundancy curves in PNG format from multiple Nonpareil npo files in a single image |
| nf-core/octopusv/plotcircos | Process | structural variant circos plot visualisation | Draw a genome-wide structural variant Circos plot from an OctopuSV SVCF file. |