nf-core/bcftools/sort @ 0.0.0-0c7146d
Summary
Sorts VCF files
Get started
Add the following snippet to your workflow script to include this module.
include { BCFTOOLS_SORT } from 'nf-core/bcftools/sort'
License
MIT License
Process
Name
|
BCFTOOLS_SORT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
The VCF/BCF file to be sorted *.{vcf.gz,vcf,bcf}
|
Output
4 channels
#1
csi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.csi
file
|
Default VCF file index *.csi
|
#2
tbi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tbi
file
|
Alternative VCF file index *.tbi
|
#3
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{vcf,vcf.gz,bcf,bcf.gz}
file
|
Sorted VCF file *.{vcf.gz}
|
#4
versions_bcftools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bcftools
string
|
The tool name |
bcftools --version | sed '1!d; s/^.*bcftools //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sort | Sort VCF files by coordinates. | http://samtools.github.io/bcftools/bcftools.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:46:26 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Fsort/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bcftools/sort/blobs/sha256:7ebcf8f87fc95657b9cb37f7bb6ecad8eebfa92178e9d9db52b19ad1f946b4b7 |
| Size | 3.4 KB |
| Checksum | sha256:7ebcf8f87fc95657b9cb37f7bb6ecad8eebfa92178e9d9db52b19ad1f946b4b7 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:05:18 (UTC) | 3 | 3.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:46:26 (UTC) | 3 | 3.4 KB |