nf-core/bcftools/split @ 0.0.0-6c4ed3a
Summary
Split a vcf file into files per chromosome
Get started
Add the following snippet to your workflow script to include this module.
include { BCFTOOLS_SPLIT } from 'nf-core/bcftools/split'
License
MIT License
Process
Name
|
BCFTOOLS_SPLIT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
Compressed vcf file *.vcf.gz
|
tbi
file
|
Compressed vcf file index *.{tbi,csi}
|
Output
2 channels
#1
split_vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf.gz
file
|
Compressed vcf files per chromosome *.vcf.gz
|
#2
versions_bcftools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bcftools
string
|
The tool name |
bcftools --version | sed '1!d; s/^.*bcftools //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bcftools | Sort VCF files by coordinates. | http://samtools.github.io/bcftools/bcftools.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:05:19 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Fsplit/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bcftools/split/blobs/sha256:47bcc10a2dc5edf799e28082848c81b03de4d6e76b2d6e4ee1aa938861ed99ee |
| Size | 2.3 KB |
| Checksum | sha256:47bcc10a2dc5edf799e28082848c81b03de4d6e76b2d6e4ee1aa938861ed99ee |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:05:19 (UTC) | 4 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:46:28 (UTC) | 4 | 2.3 KB |