Nextflow Modules
Showing module(s) with keyword "split"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/atlas/splitmerge | Process | split merge bam read group | split single end read groups by length and merge paired end reads |
| nf-core/bam_split_by_region | Workflow | split bam sam cram index | Split the reads in the input bam by specified genomic region. |
| nf-core/bamtools/split | Process | bamtools bamtools/split bam split chunk | BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files. |
| nf-core/bcftools/pluginsplit | Process | split vcf genomics | Split VCF by sample, creating single- or multi-sample VCFs. |
| nf-core/bcftools/split | Process | vcf split genomics | Split a vcf file into files per chromosome |
| nf-core/bedtools/split | Process | bedtools split bed | Split BED files into several smaller BED files |
| nf-core/csvtk/split | Process | split csv tsv | Splits CSV/TSV into multiple files according to column values |
| nf-core/dshbio/splitbed | Process | bed split feature | Split features in gzipped BED format |
| nf-core/dshbio/splitgff3 | Process | gff3 split feature | Split features in gzipped GFF3 format |
| nf-core/gatk4/splitcram | Process | cram gatk4 split splitcram | Splits CRAM files efficiently by taking advantage of their container based structure |
| nf-core/glimpse2/splitreference | Process | split reference phasing imputation | Tool to create a binary reference panel for quick reading time. |
| nf-core/gnu/split | Process | gnu split coreutils generic | Split a file into consecutive or interleaved sections |
| nf-core/goleft/indexsplit | Process | bam bed cram index split | Quickly generate evenly sized (by amount of data) regions across a number of bam/cram files |
| nf-core/last/split | Process | LAST split spliced alignment MAF | Find split or spliced alignments in a MAF file |
| nf-core/openms/idripper | Process | split idXML openms proteomics | Split a merged identification file into their originating identification files |
| nf-core/pairtools/split | Process | split pairs bam | Split a .pairsam file into .pairs and .sam. |
| nf-core/picard/splitsambynumberofreads | Process | split parallel bam subset downsample sam cram | Splits a SAM/BAM/CRAM file to multiple files. This tool splits the input query-grouped SAM/BAM/CRAM file into multiple files while maintaining the sort order. This can be used to split a large unmapped input in order to parallelize alignment. |
| nf-core/purgedups/splitfa | Process | split assembly duplicate purging | Split fasta file by 'N's to aid in self alignment for duplicate purging |
| nf-core/rseqc/splitbam | Process | bam split rnaseq quality control | Split BAM file based on gene list in BED format |
| nf-core/samplesheetparser/split | Process | illumina samplesheet split bclconvert |