nf-core/bedgovcf @ 0.0.0-3fc6d40
Summary
Convert a BED file to a VCF file according to a YAML config
Get started
Add the following snippet to your workflow script to include this module.
include { BEDGOVCF } from 'nf-core/bedgovcf'
License
MIT License
Process
Name
|
BEDGOVCF |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bed
file
|
The BED file to convert to VCF *.bed
|
config
file
|
The config file to use for the conversion *.{yml,yaml}
|
#2
tuple
meta2
map
|
Groovy Map containing fasta index information e.g. |
|---|---|
fai
file
|
The fasta index file *.fai
|
Output
3 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.vcf.gz
file
|
The converted VCF file *.vcf.gz
|
#2
versions_bgzip
tuple
${task.process}
string
|
The process name |
|---|---|
bgzip
string
|
The tool name |
bgzip --version | head -1 | sed "s/bgzip (htslib) //"
eval
|
The expression to obtain the version of the tool |
#3
versions_bedgovcf
tuple
${task.process}
string
|
The process name |
|---|---|
bedgovcf
string
|
The tool name |
bedgovcf --version 2>&1 | sed 's/^bedgovcf version //'
eval
|
The tool version |
| Tool | Description | Homepage |
|---|---|---|
| bedgovcf | A simple tool to convert BED files to VCF files | https://github.com/nvnieuwk/bedgovcf |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:03:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbedgovcf/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bedgovcf/blobs/sha256:2914feb98196a16787fdeedd5721a69e04c949dc658b96713bc0b0dab26754b7 |
| Size | 2.6 KB |
| Checksum | sha256:2914feb98196a16787fdeedd5721a69e04c949dc658b96713bc0b0dab26754b7 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:05:25 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:03:28 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:46:40 (UTC) | 4 | 2.5 KB |