nf-core/bedtools/complement @ 0.0.0-6c4ed3a
Summary
Returns all intervals in a genome that are not covered by at least one interval in the input BED/GFF/VCF file.
Get started
Add the following snippet to your workflow script to include this module.
include { BEDTOOLS_COMPLEMENT } from 'nf-core/bedtools/complement'
License
MIT License
Process
Name
|
BEDTOOLS_COMPLEMENT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
Input BED file *.{bed}
|
sizes
file
|
File which defines the chromosome lengths for a given genome *.{sizes}
|
|---|
Output
2 channels
#1
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed
file
|
Bed file with all genomic intervals that are not covered by at least one record from the input file. *.{bed}
|
#2
versions_bedtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
bedtools
string
|
The name of the tool |
bedtools --version | sed -e 's/bedtools v//g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bedtools | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. | n/a |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:05:31 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbedtools%2Fcomplement/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bedtools/complement/blobs/sha256:429ab4b2bdf0c633589ef6c559d7a790b532ef424c246a3ab65ca6b62b251db8 |
| Size | 2.3 KB |
| Checksum | sha256:429ab4b2bdf0c633589ef6c559d7a790b532ef424c246a3ab65ca6b62b251db8 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:05:31 (UTC) | 4 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:03:35 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:46:49 (UTC) | 4 | 2.3 KB |