nf-core/biscuit/mergecg @ 0.0.0-6c4ed3a
Summary
Merges methylation information for opposite-strand C's in a CpG context
Get started
Add the following snippet to your workflow script to include this module.
include { BISCUIT_MERGECG } from 'nf-core/biscuit/mergecg'
License
MIT License
Name
|
BISCUIT_MERGECG |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
Biscuit BED file (output of biscuit vcf2bed) |
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input genome fasta file |
meta3
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
index
directory
|
Directory containing biscuit genome index |
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed.gz
file
|
Gzipped BED file with merged methylation information *.bed.gz
|
versions_biscuit
tuple
${task.process}
string
|
The name of the process |
|---|---|
biscuit
string
|
The name of the tool |
biscuit version |& sed '1!d; s/^.*BISCUIT Version: //'
eval
|
The expression to obtain the version of the tool |
versions_samtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
samtools
string
|
The name of the tool |
samtools --version |& sed '1!d; s/^.*samtools //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| biscuit | A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data | https://huishenlab.github.io/biscuit/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:06:24 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbiscuit%2Fmergecg/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/biscuit/mergecg/blobs/sha256:3325d5eb43f47050b038416a32d07158488e7e7c49c2fd1ef70768505376c883 |
| Size | 2.7 KB |
| Checksum | sha256:3325d5eb43f47050b038416a32d07158488e7e7c49c2fd1ef70768505376c883 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:06:24 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:47:56 (UTC) | 3 | 2.7 KB |