nf-core/bowtie/build @ 0.0.0-6c4ed3a
Summary
Create bowtie index for reference genome
Get started
Add the following snippet to your workflow script to include this module.
include { BOWTIE_BUILD } from 'nf-core/bowtie/build'
License
MIT License
Process
Name
|
BOWTIE_BUILD |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing information about the genome fasta e.g. [ id:'test' ] |
|---|---|
fasta
file
|
Input genome fasta file |
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing information about the genome fasta e.g. [ id:'test' ] |
|---|---|
bowtie
string
|
Folder containing bowtie genome index files *.ebwt
|
#2
versions_bowtie
tuple
${task.process}
string
|
The name of the process |
|---|---|
bowtie
string
|
Folder containing bowtie genome index files *.ebwt
|
bowtie --version 2>&1 | sed -n 's/.*bowtie-align-s version //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bowtie | bowtie is a software package for mapping DNA sequences against a large reference genome, such as the human genome. | http://bowtie-bio.sourceforge.net/index.shtml |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:07:48 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbowtie%2Fbuild/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bowtie/build/blobs/sha256:9d5f87b8b1848fa82851db4f21c9db8eda9eff07d3509d0c92554ccf0b948974 |
| Size | 2.4 KB |
| Checksum | sha256:9d5f87b8b1848fa82851db4f21c9db8eda9eff07d3509d0c92554ccf0b948974 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:07:48 (UTC) | 4 | 2.4 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:00:30 (UTC) | 3 | 2.5 KB | |
| 0.0.0-22e46af | 15 Apr 2026 15:00:22 (UTC) | 2 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:49:25 (UTC) | 4 | 2.6 KB |