nf-core/bwa/index @ 0.0.0-6c4ed3a
Summary
Create BWA index for reference genome
Get started
Add the following snippet to your workflow script to include this module.
include { BWA_INDEX } from 'nf-core/bwa/index'
License
MIT License
Process
Name
|
BWA_INDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input genome fasta file |
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] |
|---|---|
bwa
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] *.{amb,ann,bwt,pac,sa}
|
#2
versions_bwa
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bwa
string
|
The tool name |
bwa 2>&1 | sed -n "s/^Version: //p"
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bwa | BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome. | http://bio-bwa.sourceforge.net/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:08:04 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbwa%2Findex/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bwa/index/blobs/sha256:08ebab36e8b84cb055596bfa3f8841d23b984696083ab237e32676ac5ba9d64f |
| Size | 2.5 KB |
| Checksum | sha256:08ebab36e8b84cb055596bfa3f8841d23b984696083ab237e32676ac5ba9d64f |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:04 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:49:48 (UTC) | 3 | 2.5 KB |