nf-core/bwamem2/index @ 0.0.0-6c4ed3a
Summary
Create BWA-mem2 index for reference genome
Get started
Add the following snippet to your workflow script to include this module.
include { BWAMEM2_INDEX } from 'nf-core/bwamem2/index'
License
MIT License
Process
Name
|
BWAMEM2_INDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input genome fasta file |
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bwamem2
string
|
BWA genome index files *.{0123,amb,ann,bwt.2bit.64,pac}
|
#2
versions_bwamem2
tuple
${task.process}
string
|
The name of the process |
|---|---|
bwamem2
string
|
BWA genome index files *.{0123,amb,ann,bwt.2bit.64,pac}
|
bwa-mem2 version | grep -o -E "[0-9]+(\.[0-9]+)+"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bwamem2 | BWA-mem2 is a software package for mapping DNA sequences against a large reference genome, such as the human genome. | https://github.com/bwa-mem2/bwa-mem2 |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:08:10 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbwamem2%2Findex/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bwamem2/index/blobs/sha256:af9b0024ffb12f92d2952566356f499fda9a3bd5b2c4a3d7535cd484e87a953b |
| Size | 2.5 KB |
| Checksum | sha256:af9b0024ffb12f92d2952566356f499fda9a3bd5b2c4a3d7535cd484e87a953b |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:10 (UTC) | 4 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:49:56 (UTC) | 4 | 2.5 KB |