Nextflow Registry | nf-core/bwameme/index@0.0.0-6c4ed3a

nf-core/bwameme/index @ 0.0.0-6c4ed3a

Create BWA-MEME index for reference genome

index fasta genome reference

Latest version: 0.0.0-6c4ed3a

Total downloads: 7

Source: nf-core/modules

Authors: @ramprasadn

Maintainers: @ramprasadn

Create BWA-MEME index for reference genome

Add the following snippet to your workflow script to include this module.

include { BWAMEME_INDEX } from 'nf-core/bwameme/index'

MIT License

Process

`Name`	`BWAMEME_INDEX`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`fasta` file	Input genome fasta file

Output 2 channels

#1 index tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`bwameme` file	BWA-MEME genome index files `*.{0123,amb,ann,pac,pos_packed,suffixarray_uint64,suffixarray_uint64_L0_PARAMETERS,suffixarray_uint64_L1_PARAMETERS,suffixarray_uint64_L2_PARAMETERS}`

#2 versions_bwameme tuple

`${task.process}` string	The name of the process
`bwameme` string	The name of the tool
`1.0.6` string	The expression to obtain the version of the tool

Tool	Description	Homepage
bwameme	Faster BWA-MEM2 using learned-index	https://github.com/kaist-ina/BWA-MEME

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:08:13 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fbwameme%2Findex/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bwameme/index/blobs/sha256:52fdc984e2372b1a5c7a12d5fb620f053327c5de8015bb4e38e248198dc633d0
Size	2.7 KB
Checksum	sha256:52fdc984e2372b1a5c7a12d5fb620f053327c5de8015bb4e38e248198dc633d0
Downloads	3

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:08:13 (UTC)		3	2.7 KB
0.0.0-0c7146d	08 Apr 2026 18:49:59 (UTC)		4	2.7 KB