nf-core/calder2 @ 0.0.0-6c4ed3a
Summary
Hierarchical Hi-C compartment computation
Get started
Add the following snippet to your workflow script to include this module.
include { CALDER2 } from 'nf-core/calder2'
License
MIT License
Process
Name
|
CALDER2 |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information. E.g. [ id:'test', single_end:false ] |
|---|---|
cool
file
|
Path to COOL file *.{cool.mcool}
|
resolution
integer
|
In case a .mcool file is provided, which resolution level to use for the analysis |
|---|
Output
3 channels
#1
output_folder
tuple
meta
map
|
Groovy Map containing sample information. E.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}/
directory
|
Output folder containing sub-compartment (.tsv/.bed) and domain boundaries calls (.bed) |
#2
versions_calder
tuple
${task.process}
string
|
The name of the process |
|---|---|
calder
string
|
The name of the tool |
0.7
string
|
The expression to obtain the version of the tool |
#3
intermediate_data_folder
tuple
meta
map
|
Groovy Map containing sample information. E.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}/intermediate_data/
directory
|
Output folder containing intermediate data produced during the computation |
| Tool | Description | Homepage |
|---|---|---|
| calder2 | Hierarchical Hi-C compartment computation | https://github.com/CSOgroup/CALDER2 |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:08:23 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcalder2/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/calder2/blobs/sha256:ea42cc5c5fc90d3b5978902bcec1824c2782c791e19a7f30b3b01a09a8fb2b27 |
| Size | 3.2 KB |
| Checksum | sha256:ea42cc5c5fc90d3b5978902bcec1824c2782c791e19a7f30b3b01a09a8fb2b27 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:23 (UTC) | 3 | 3.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:06 (UTC) | 4 | 3.2 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:00:38 (UTC) | 3 | 3.2 KB | |
| 0.0.0-22e46af | 15 Apr 2026 15:00:27 (UTC) | 3 | 3.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:50:15 (UTC) | 3 | 3.2 KB |