Nextflow Modules
Showing module(s) with keyword "hi-c"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/calder2 | Process | calder2 genome topology compartments domains hi-c | Hierarchical Hi-C compartment computation |
| nf-core/chromap/chromap | Process | chromap alignment map fastq bam sam hi-c atac-seq chip-seq trimming duplicate removal | Performs preprocessing and alignment of chromatin fastq files to fasta reference files using chromap. |
| nf-core/salsa2 | Process | assembly hi-c scaffolding long reads salsa salsa2 | SALSA, A tool to scaffold long read assemblies with HiC |