nf-core/chewbbaca/createschema @ 0.0.0-3fc6d40
Summary
Create a schema to determine the allelic profiles of a genome
Get started
Add the following snippet to your workflow script to include this module.
include { CHEWBBACA_CREATESCHEMA } from 'nf-core/chewbbaca/createschema'
License
MIT License
Process
Name
|
CHEWBBACA_CREATESCHEMA |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
directory
|
One or multiple FASTA files to create schema from *.{fasta,fa,fas,fna,fasta.gz,fa.gz,fas.gz,fna.gz}
|
prodigal_tf
file
|
File containing the prodigal training file *.ptf
|
|---|
cds
file
|
File containing the prodigal cds file *.cds
|
|---|
Output
4 channels
#1
schema
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
results/$meta.id
directory
|
Schema directory */
|
#2
invalid_cds
results/invalid_cds.txt
file
|
File containing the list of alleles predicted by Prodigal that were excluded *_invalid_cds.txt
|
|---|
#3
cds_coordinates
results/cds_coordinates.tsv
file
|
File containing the coordinates of the CDS in the input sample *_cds_coordinates.tsv
|
|---|
#4
versions_chewbbaca
tuple
${task.process}
string
|
The name of the process |
|---|---|
chewbbaca
string
|
The name of the tool |
chewie --version 2>&1 | sed 's/chewBBACA version: //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| chewbbaca | A complete suite for gene-by-gene schema creation and strain identification. | https://chewbbaca.readthedocs.io/en/latest/index.html |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:05:51 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fchewbbaca%2Fcreateschema/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/chewbbaca/createschema/blobs/sha256:6d287a64df4b86330a8232292c0c12a98da217ceb41f813a332d8cbf0211c017 |
| Size | 3.2 KB |
| Checksum | sha256:6d287a64df4b86330a8232292c0c12a98da217ceb41f813a332d8cbf0211c017 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:09:06 (UTC) | 4 | 3.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:51 (UTC) | 3 | 3.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:51:39 (UTC) | 1 | 3.2 KB |