nf-core/circexplorer2/annotate @ 0.0.0-6c4ed3a
Summary
Annotate circRNAs detected in the output from CIRCexplorer2 parse
Get started
Add the following snippet to your workflow script to include this module.
include { CIRCEXPLORER2_ANNOTATE } from 'nf-core/circexplorer2/annotate'
License
MIT License
Process
Name
|
CIRCEXPLORER2_ANNOTATE |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
junctions
file
|
Reformatted junctions file *.{junction}
|
fasta
file
|
Genome FASTA file *.{fa,fasta}
|
|---|
gene_annotation
file
|
Reformatted GTF file for CIRCexplorer2 *.{txt}
|
|---|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Annotated circRNA TXT file *.{txt}
|
#2
versions_circexplorer2
tuple
${task.process}
string
|
The name of the process |
|---|---|
circexplorer2
string
|
The name of the tool |
CIRCexplorer2 --version 2>&1; true
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| circexplorer2 | Circular RNA analysis toolkits | https://github.com/YangLab/CIRCexplorer2/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:09:13 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcircexplorer2%2Fannotate/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/circexplorer2/annotate/blobs/sha256:a399b36e97cf16cf712c707b580f350616a4c9debdd18e7dea5e9da4dd0da1c3 |
| Size | 2.2 KB |
| Checksum | sha256:a399b36e97cf16cf712c707b580f350616a4c9debdd18e7dea5e9da4dd0da1c3 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:09:13 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:53 (UTC) | 4 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:51:48 (UTC) | 3 | 2.2 KB |