Nextflow Modules
Showing module(s) with keyword "annotate"
| Module | Keywords | Description |
|---|---|---|
| nf-core/anarcii | annotate antibody TCR immunology | A language model for antigen receptor numbering |
| nf-core/bcftools/annotate | bcftools annotate vcf remove add | Add or remove annotations. |
| nf-core/cadd | cadd annotate variants | CADD is a tool for scoring the deleteriousness of single nucleotide variants as well as insertion/deletions variants in the human genome. |
| nf-core/circexplorer2/annotate | rna circrna annotate | Annotate circRNAs detected in the output from CIRCexplorer2 parse |
| nf-core/gatk4/svannotate | annotate gatk4 structural variants svannotate vcf | Adds predicted functional consequence, gene overlap, and noncoding element overlap annotations to SV VCF from GATK-SV pipeline. Input files are an SV VCF, a GTF file containing primary or canonical transcripts, and a BED file containing noncoding elements. Output file is an annotated SV VCF. |
| nf-core/genmod/annotate | annotate genmod ranking | for annotating regions, frequencies, cadd scores |
| nf-core/paraphrase | long-read paraphrase annotate | Parse and annotate paraphrase JSONs |
| nf-core/snpsift/annotate | variant calling annotate snpsift cancer genomics | Annotate a VCF file with another VCF file |
| nf-core/stranger | STR repeat_expansions annotate vcf | Annotates output files from ExpansionHunter with the pathologic implications of the repeat sizes. |
| nf-core/vcfanno | vcf bed annotate variant lua toml | quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files |