nf-core/clame @ 0.0.0-6c4ed3a
Summary
binning of metagenomic sequences
Get started
Add the following snippet to your workflow script to include this module.
include { CLAME } from 'nf-core/clame'
License
MIT License
Name
|
CLAME |
|---|
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Nucleotide sequences in FASTA format *.{fasta,fa,fna,faa}
|
fm
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.fm9
file
|
FM-index output *.{fm9}
|
bins
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.binning
file
|
All bins reported *.{binning}
|
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.fasta
file
|
Output fasta file for all the bins reported, optional since it will be created when bins can be found *.{fasta}
|
index
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.index
file
|
1st column contains the original name for each read, 2nd column the index used by CLAME *.{index}
|
links
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.links
file
|
Histogram links by number of reads *.{links}
|
result
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.result
file
|
Adjacency list for the overlap detected by each read *.{result}
|
versions_clame
tuple
${task.process}
string
|
The name of the process |
|---|---|
clame
string
|
The name of the tool |
clame -h 2>&1 | sed '2!d;s/version //;s/ .*//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| clame | CLAME is a binning software for metagenomic reads. It immplements a fm-index search algorithm for nucleotide sequence alignment. Then it uses strongly connected component strategy to bin sequences with similar DNA composition. | https://github.com/andvides/CLAME |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:09:19 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fclame/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/clame/blobs/sha256:81641e14caf395a2cb1cd4fc27d5cd166f5e92de7d279d0a6f22745cbc6ad7a7 |
| Size | 2.9 KB |
| Checksum | sha256:81641e14caf395a2cb1cd4fc27d5cd166f5e92de7d279d0a6f22745cbc6ad7a7 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:09:19 (UTC) | 3 |