Nextflow Modules
Showing module(s) with keyword "binning"
| Module | Keywords | Description |
|---|---|---|
| nf-core/clame | sort genomics binning metagenomics | binning of metagenomic sequences |
| nf-core/comebin/runcomebin | metagenomics binning clustering | Effective binning of metagenomic contigs using COntrastive Multi-viEw representation learning |
| nf-core/concoct/concoct | contigs fragment mags binning concoct kmer nucleotide composition metagenomics bins | Unsupervised binning of metagenomic contigs by using nucleotide composition - kmer frequencies - and coverage data for multiple samples |
| nf-core/concoct/concoctcoveragetable | contigs fragment mags binning bed bam subcontigs coverage | Generate the input coverage table for CONCOCT using a BEDFile |
| nf-core/concoct/cutupfasta | contigs fragment mags binning fasta cut cut up | Cut up fasta file in non-overlapping or overlapping parts of equal length. |
| nf-core/concoct/extractfastabins | contigs fragment mags binning fasta cut cut up bins merge | Creates a FASTA file for each new cluster assigned by CONCOCT |
| nf-core/concoct/mergecutupclustering | contigs fragment mags binning fasta cut cut up merge | Merge consecutive parts of the original contigs original cut up by cut_up_fasta.py |
| nf-core/dastool/dastool | binning das tool table de novo bins contigs assembly das_tool | DAS Tool binning step. |
| nf-core/dastool/fastatocontig2bin | binning das tool table de novo bins contigs assembly das_tool | Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format |
| nf-core/dastool/scaffolds2bin | binning das tool table de novo bins contigs assembly das_tool | Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format |
| nf-core/fairy/coverage | metagenomics coverage binning alignment-free contig | Computes coverage depth statistics for assembled contigs from one or more fairy sketch files, producing a MetaBAT2-compatible TSV with per-contig mean depth and variance columns. |
| nf-core/maxbin2 | metagenomics assembly binning maxbin2 de novo assembly mags metagenome-assembled genomes contigs | MaxBin is a software that is capable of clustering metagenomic contigs |
| nf-core/metabat2/jgisummarizebamcontigdepths | sort binning depth bam coverage de novo assembly | Depth computation per contig step of metabat2 |
| nf-core/metabat2/metabat2 | sort binning depth bam coverage de novo assembly | Metagenome binning of contigs |
| nf-core/semibin/singleeasybin | binning assembly-binning metagenomics | metagenomic binning with self-supervised learning |
| nf-core/va |