nf-core/cnvkit/genemetrics @ 0.0.0-6c4ed3a
Summary
Copy number variant detection from high-throughput sequencing data
Get started
Add the following snippet to your workflow script to include this module.
include { CNVKIT_GENEMETRICS } from 'nf-core/cnvkit/genemetrics'
License
MIT License
Process
Name
|
CNVKIT_GENEMETRICS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
cnr
file
|
CNR file *.cnr
|
cns
file
|
CNS file [Optional] *.cns
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
TSV file *.tsv
|
#2
versions_cnvkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
cnvkit
string
|
The name of the tool |
cnvkit.py version | sed -e "s/cnvkit v//g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cnvkit | CNVkit is a Python library and command-line software toolkit to infer and visualize copy number from high-throughput DNA sequencing data. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent. | https://cnvkit.readthedocs.io/en/stable/index.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:10:42 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcnvkit%2Fgenemetrics/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cnvkit/genemetrics/blobs/sha256:e242cab93315037b1256bef73a03e15b475b7e969351bc1ce12177521da9c064 |
| Size | 2.4 KB |
| Checksum | sha256:e242cab93315037b1256bef73a03e15b475b7e969351bc1ce12177521da9c064 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:10:42 (UTC) | 4 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:17 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:53:09 (UTC) | 3 | 2.4 KB |