Nextflow Registry | nf-core/cnvnator/convert2vcf@0.0.0-0c7146d

nf-core/cnvnator/convert2vcf @ 0.0.0-0c7146d

convert2vcf.pl is command line tool to convert CNVnator calls to vcf format.

cnvnator cnv cna

Latest version: 0.0.0-6c4ed3a

Total downloads: 6

Source: nf-core/modules

Authors: @ramprasadn

Maintainers: @ramprasadn

convert2vcf.pl is command line tool to convert CNVnator calls to vcf format.

Add the following snippet to your workflow script to include this module.

include { CNVNATOR_CONVERT2VCF } from 'nf-core/cnvnator/convert2vcf'

MIT License

Process

`Name`	`CNVNATOR_CONVERT2VCF`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`calls` file	A tab file containing CNVnator calls `*.tab`

Output 2 channels

#1 vcf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.vcf` file	CNVnator calls in vcf format `*.vcf`

#2 versions_cnvnator tuple

`${task.process}` string	The name of the process
`cnvnator` string	The name of the tool
`cnvnator 2>&1 \| sed -n '3s/CNVnator v//p'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
cnvnator	Tool for calling copy number variations.	https://github.com/abyzovlab/CNVnator

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 18:53:16 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fcnvnator%2Fconvert2vcf/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cnvnator/convert2vcf/blobs/sha256:f5e96ffc784cb9d4914624ceb24adf1cbe9a49ba6e530d238f7b027fe5ce360e
Size	2.7 KB
Checksum	sha256:f5e96ffc784cb9d4914624ceb24adf1cbe9a49ba6e530d238f7b027fe5ce360e
Downloads	3

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:10:47 (UTC)		3	2.7 KB
0.0.0-0c7146d	08 Apr 2026 18:53:16 (UTC)		3	2.7 KB