nf-core/cooler/digest @ 0.0.0-6c4ed3a
Summary
Generate fragment-delimited genomic bins
Get started
Add the following snippet to your workflow script to include this module.
include { COOLER_DIGEST } from 'nf-core/cooler/digest'
License
MIT License
Process
Name
|
COOLER_DIGEST |
|---|
Input
3 channels
fasta
file
|
Genome assembly FASTA file or folder containing FASTA files (uncompressed). *.{fasta,fa}
|
|---|
chromsizes
file
|
Path to a chromsizes file. |
|---|
enzyme
string
|
Name of restriction enzyme. e.g. CviQI. |
|---|
Output
2 channels
#1
bed
*.bed
file
|
A genome segmentation of restriction fragments as a BED file. *.{bed}
|
|---|
#2
versions_cooler
tuple
${task.process}
string
|
The name of the process |
|---|---|
cooler
string
|
The name of the tool |
cooler --version 2>&1 | sed "s/cooler, version //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cooler | Sparse binary format for genomic interaction matrices | https://open2c.github.io/cooler/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:11:21 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcooler%2Fdigest/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cooler/digest/blobs/sha256:aa4d4baef1ac847b20a48b660e18d909a686e2745a5b29b812e85ab68c497765 |
| Size | 2.2 KB |
| Checksum | sha256:aa4d4baef1ac847b20a48b660e18d909a686e2745a5b29b812e85ab68c497765 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:21 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:51 (UTC) | 3 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:54:05 (UTC) | 3 | 2.1 KB |