nf-core/coptr/map @ 0.0.0-3fc6d40
Summary
Maps the reads to the reference database
Get started
Add the following snippet to your workflow script to include this module.
include { COPTR_MAP } from 'nf-core/coptr/map'
License
MIT License
Process
Name
|
COPTR_MAP |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
fastq file with reads *.{.fastq,.fq,.fastq.gz,fq.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing index genome id and path e.g. [ id:'test', 'bowtie2' ] |
|---|---|
index
file
|
Directory with Bowtie2 genome index files *.ebwt
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.bam
file
|
Alignment (BAM) file of reads mapped to the reference database *.{bam}
|
#2
versions_coptr
tuple
${task.process}
string
|
The name of the process |
|---|---|
coptr
string
|
The name of the tool |
coptr |& sed -E '11!d ; s/CoPTR.*?\(v(.*?)\).*/\1/'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| coptr | Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads. | https://github.com/tyjo/coptr |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:08:04 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcoptr%2Fmap/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/coptr/map/blobs/sha256:e2006bf7f80455654c29407c69d26efa4dbce873300647e7324a8372bc1d3b42 |
| Size | 3.3 KB |
| Checksum | sha256:e2006bf7f80455654c29407c69d26efa4dbce873300647e7324a8372bc1d3b42 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:35 (UTC) | 3 | 3.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:04 (UTC) | 3 | 3.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:54:23 (UTC) | 2 | 3.2 KB |