nf-core/coptr/merge @ 0.0.0-3fc6d40
Summary
Merge reads that were mapped to multiple indices
Get started
Add the following snippet to your workflow script to include this module.
include { COPTR_MERGE } from 'nf-core/coptr/merge'
License
MIT License
Process
Name
|
COPTR_MERGE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bams
file
|
bam files to merge. Assumes that the reads were mapped to different indices. *.bam
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.bam
file
|
Merged BAM file *.{bam}
|
#2
versions_coptr
tuple
${task.process}
string
|
The name of the process |
|---|---|
coptr
string
|
The name of the tool |
coptr |& sed -E '11!d ; s/CoPTR.*?\(v(.*?)\).*/\1/'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| coptr | Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads. | https://github.com/tyjo/coptr |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:08:05 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcoptr%2Fmerge/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/coptr/merge/blobs/sha256:037258142af69df08bae46d17e40c638c987a5157a6b60dc14cb0a5320ad1c8a |
| Size | 2.4 KB |
| Checksum | sha256:037258142af69df08bae46d17e40c638c987a5157a6b60dc14cb0a5320ad1c8a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:36 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:05 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:54:25 (UTC) | 2 | 2.3 KB |