nf-core/crispresso2 @ 0.0.0-6c4ed3a
Summary
A software pipeline for the analysis of genome editing outcomes from deep sequencing data
Get started
Add the following snippet to your workflow script to include this module.
include { CRISPRESSO2 } from 'nf-core/crispresso2'
License
MIT License
Process
Name
|
CRISPRESSO2 |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
reads
file
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively. *.{fastq,fq,fastq.gz,fq.gz}
|
Output
4 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
CRISPResso_on_*/*.txt
file
|
CRISPResso text output files CRISPResso_on_*/*.txt
|
#2
html
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.html
file
|
CRISPResso HTML report *.html
|
#3
results
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
CRISPResso_on_*
directory
|
CRISPResso output directory CRISPResso_on_*
|
#4
versions_crispresso2
tuple
${task.process}
string
|
The name of the process |
|---|---|
crispresso2
string
|
The name of the tool |
CRISPResso --version 2>&1 | sed 's/CRISPResso //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| crispresso2 | CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments. | https://crispresso.pinellolab.partners.org/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:11:50 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcrispresso2/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/crispresso2/blobs/sha256:ef5373350e7eea58487185c2797deeac85de259fed83155db4d9ddcad0e5c620 |
| Size | 3.1 KB |
| Checksum | sha256:ef5373350e7eea58487185c2797deeac85de259fed83155db4d9ddcad0e5c620 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:50 (UTC) | 3 | 3.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:11 (UTC) | 3 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:54:45 (UTC) | 3 | 3.1 KB |