Nextflow Modules
Showing module(s) with keyword "amplicon"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/artic/aligntrim | Process | artic primer trimming amplicon genomics sequencing nanopore illumina | Standalone version of fieldbioinformatics aligntrim. Soft clips amplicon scheme primer sites in BAM/SAM files. |
| nf-core/crabs/import | Process | insilico amplicon sequencing inhouse | In-house generated or curated data can be imported into CRABS. |
| nf-core/crabs/insilicopcr | Process | insilico PCR amplicon sequencing | CRABS extracts the amplicon region of the primer set by conducting an in silico PCR. |
| nf-core/crispresso2 | Process | genome editing CRISPR sequencing amplicon | A software pipeline for the analysis of genome editing outcomes from deep sequencing data |
| nf-core/samtools/ampliconclip | Process | amplicon clipping ampliconclip samtools | Clips read alignments where they match BED file defined regions |