nf-core/crumble @ 0.0.0-6c4ed3a
Summary
Controllable lossy compression of BAM/CRAM files
Get started
Add the following snippet to your workflow script to include this module.
include { CRUMBLE } from 'nf-core/crumble'
License
MIT License
Name
|
CRUMBLE |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
BAM/CRAM/SAM file *.{bam,cram,sam}
|
keepbed
file
|
BED file defining regions to keep quality |
|---|
bedout
boolean
|
set to true to output suspicious regions to a BED file |
|---|
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
optional filtered/compressed BAM file *.{bam}
|
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed
file
|
optional suspicious regions BED file *{bed}
|
sam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sam
file
|
optional filtered/compressed SAM file *.{sam}
|
cram
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.cram
file
|
optional filtered/compressed CRAM file *.{cram}
|
versions_crumble
tuple
${task.process}
string
|
The name of the process |
|---|---|
crumble
string
|
The name of the tool |
0.9.1
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| crumble | Controllable lossy compression of BAM/CRAM files | https://github.com/jkbonfield/crumble |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:11:51 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcrumble/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/crumble/blobs/sha256:1b83fcaa066a5e56ad33862d2640ea66ee76e93fb2ab9fbd618a8c5712a6e7e5 |
| Size | 2.8 KB |
| Checksum | sha256:1b83fcaa066a5e56ad33862d2640ea66ee76e93fb2ab9fbd618a8c5712a6e7e5 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:51 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:13 (UTC) | 4 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:54:47 (UTC) | 4 | 2.7 KB |