Nextflow Modules
Showing module(s) with keyword "compress"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/cat/fastq | Process | cat fastq concatenate compress | Concatenates fastq files. Supports both compressed (.gz) and uncompressed inputs; uncompressed files are automatically gzip-compressed during concatenation. |
| nf-core/crumble | Process | compress bam sam cram | Controllable lossy compression of BAM/CRAM files |
| nf-core/htslib/bgziptabix | Process | compress decompress index bgzip tabix gzip bzip xz | Multi-purpose module to compress, decompress and index files using bgzip and tabix. |
| nf-core/pigz/compress | Process | compress gzip parallelized | Compresses files with pigz. |
| nf-core/tabix/bgzip | Process | compress decompress bgzip tabix | DEPRECATED. Use HTSLIB/BGZIPTABIX instead. Compresses/decompresses files |
| nf-core/tabix/bgziptabix | Process | bgzip compress index tabix vcf | DEPRECATED. Use HTSLIB/BGZIPTABIX instead. bgzip a sorted tab-delimited genome file and then create tabix index |