nf-core/custom/addmostseverepli @ 0.0.0-0c7146d
Summary
Annotate a VEP annotated VCF with the most severe pLi field
Get started
Add the following snippet to your workflow script to include this module.
include { CUSTOM_ADDMOSTSEVEREPLI } from 'nf-core/custom/addmostseverepli'
License
MIT License
Process
Name
|
CUSTOM_ADDMOSTSEVEREPLI |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
VEP annotated VCF file *.{vcf,vcf.gz}
|
Output
3 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.vcf.gz
file
|
Annotated VCF file *.vcf.gz
|
#2
versions_bgzip
tuple
${task.process}
string
|
The name of the process |
|---|---|
bgzip
string
|
The name of the tool |
bgzip --version | sed '1!d;s/.* //'
eval
|
The expression to obtain the version of the tool |
#3
versions_addmostseverepli
tuple
${task.process}
string
|
The name of the process |
|---|---|
addmostseverepli
string
|
The name of the tool |
1.2.0
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| custom | Custom module to annotate a VEP annotated VCF with the most severe pLi field | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:55:05 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Faddmostseverepli/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/custom/addmostseverepli/blobs/sha256:839ddf397455340d033be3b6a0add632a793bfa91a5a788e705fb28a0da7aed7 |
| Size | 4.0 KB |
| Checksum | sha256:839ddf397455340d033be3b6a0add632a793bfa91a5a788e705fb28a0da7aed7 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:12:02 (UTC) | 4 | 4.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:55:05 (UTC) | 3 | 4.0 KB |