nf-core/custom/gtffilter @ 0.0.0-02a6b4c
Summary
Filter a gtf file to keep only regions that are located on a chromosome represented in a given fasta file
Get started
Add the following snippet to your workflow script to include this module.
include { CUSTOM_GTFFILTER } from 'nf-core/custom/gtffilter'
License
MIT License
Process
Name
|
CUSTOM_GTFFILTER |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
gtf
file
|
GTF file *.{gtf}
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Genome fasta file *.{fasta,fa}
|
Output
2 channels
#1
gtf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.${suffix}
file
|
Filtered GTF file *.{gtf}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| gtffilter | Filter a gtf file to keep only regions that are located on a chromosome represented in a given fasta file | n/a |
| Version | 0.0.0-02a6b4c |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 13 Apr 2026 15:00:20 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Fgtffilter/0.0.0-02a6b4c/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/custom/gtffilter/blobs/sha256:c611729fdd55031e843b4b68928eeb827e4c3643d4ded602e3e675441d9b613c |
| Size | 4.7 KB |
| Checksum | sha256:c611729fdd55031e843b4b68928eeb827e4c3643d4ded602e3e675441d9b613c |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:12:09 (UTC) | 3 | 4.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:29 (UTC) | 3 | 4.7 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:00:48 (UTC) | 4 | 4.7 KB | |
| 0.0.0-02a6b4c | 13 Apr 2026 15:00:20 (UTC) | 3 | 4.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:55:17 (UTC) | 4 | 4.3 KB |